Publications of the Computational Biology Section

Showing results 1 - 10 out of 24

2024


Gotsmann VL, Ting MKY, Haase N, Rudorf S, Zoschke R, Willmund F. Utilizing high-resolution ribosome profiling for the global investigation of gene expression in Chlamydomonas. Plant Journal. 2024 Feb 26;117(5):1614-1634. doi: 10.1111/tpj.16577
Haase N, Holtkamp W, Christ S, Heinemann D, Rodnina MV, Rudorf S. Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation. PLoS Computational Biology. 2024 Mar 5;20(3):1011918. doi: 10.1101/2023.05.17.541147, 10.1371/journal.pcbi.1011918
Stemwedel K, Haase N, Christ S, Bogdanova NV, Rudorf S. Synonymous rpsH variants: the common denominator in Escherichia coli adapting to ionizing radiation. NAR Genomics and Bioinformatics. 2024 Sept;6(3):lqae110. Epub 2024 Aug 24. doi: 10.1093/nargab/lqae110

2023


Christ S, Schwabeneder D, Rackauckas C, Borregaard M, Breloff T. Plots.jl – A User Extendable Plotting API for the Julia Programming Language. Journal of open research software. 2023 Feb 14;11(1):5. doi: 10.5334/jors.431
Förste S, Vonshak O, Daube SS, Bar-Ziv RH, Lipowsky R, Rudorf S. Computational analysis of protein synthesis, diffusion, and binding in compartmental biochips. Microbial cell factories. 2023 Nov 30;22(1):244. doi: 10.1186/s12934-023-02237-5
Goth F, Alves R, Braun M, Castro LJ, Chourdakis G, Christ S et al. Foundational Competencies and Responsibilities of a Research Software Engineer. 2023 Nov 19. Epub 2023 Nov 19. doi: 10.48550/arXiv.2311.11457
Lankeit J, Förste S, Rudorf S. Dominance analysis of competing protein assembly pathways. PLOS ONE. 2023 Feb 24;18(2):e0281964. doi: 10.1371/journal.pone.0281964

2022


Alirezaeizanjani Z, Trösemeier JH, Kamp C, Rudorf S. Tailoring Codon Usage to the Underlying Biology for Protein Expression Optimization. In Garcia Fruitos E, Aris Giralt A, editors, Insoluble Proteins: Methods and Protocols. New York: Humana Press Inc. 2022. p. 85-92. (Methods in Molecular Biology). doi: 10.1007/978-1-0716-1859-2_4
Christ S. Creating a reproducible report using julia and pythontex. 2022.

2020


Bhatia T, Christ S, Steinkühler J, Dimova R, Lipowsky R. Simple sugars shape giant vesicles into multispheres with many membrane necks. SOFT MATTER. 2020 Feb 7;16(5):1246-1258. doi: 10.1039/c9sm01890e